PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67972.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 208aa    MW: 23097.1 Da    PI: 6.5324
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67972.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-1257102555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +  +ErrRR r+N  +  Lr ++P+      +K+sK ++L  A+++Ik+Lq
  MLOC_67972.2  57 NLDAERRRRGRLNGNILALRAVVPNI-----TKMSKESTLADAIDHIKKLQ 102
                   5579*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-1652117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.81152101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.36E-652105No hitNo description
PfamPF000101.1E-956102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-1358107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1359113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MPRRPRASRG GSGGEEVKME DFVESMLNLG GGGGEGEESE EGEQLPAADA TQYKSKNLDA  60
ERRRRGRLNG NILALRAVVP NITKMSKEST LADAIDHIKK LQNQVLELQS QLADSPGEAW  120
EKQGSASCSE SFAPTDNIHY QGQVELIPLG SCKYNLKIFW TKRAGLFTKV LEALCNYNVQ  180
VLSLNTITYY GYAESFFCIE RLRVSRML
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562948.11e-106PREDICTED: transcription factor ABORTED MICROSPORES-like
SwissprotB9FXT33e-88UDT1_ORYSJ; Transcription factor UDT1
TrEMBLM0YCV01e-154M0YCV0_HORVD; Uncharacterized protein
STRINGMLOC_67972.11e-148(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.13e-13bHLH family protein